Basic Information
VIS ID
TVIS10019663
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1840
Integrated sequence
GTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAA| |TCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGT
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
49077286/48683503 (Hg38)
End
49077286/48683503 (Hg38)
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/28973; hsa-let-7i/Downstream/88472;
Nearest TSS
ENST00000382841/Upstream/1265; ENST00000548054/Downstream/12474;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/985, chr12-CpG: 66/Downstream/32769
Nearby gene
CCNT1
Upstream sequence
cgtatgaattatttatttctggaattttccatgtaatatttttgtactgcggttcaccatgaataactgaaactgaagaagaagaaaccgcggataaggg
Downstream sequence
CCTGCCAAAACAAAAGAGAGTATCTGGAGCTGGAGGGGTTCAGCACTCTTGCCATGTGGGCAGTGGCTGTGGCAGGGGATGAGACGGCCATACCACTGGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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