Basic Information
VIS ID
TVIS10019664
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1816
Integrated sequence
CTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
63780889/63387109 (Hg38)
End
63780889/63387109 (Hg38)
Nearest miRNA
hsa-let-7i/Upstream/783340; hsa-mir-10527/Downstream/436554;
Nearest TSS
ENST00000382841/Upstream/27072; ENST00000536219/Downstream/182360;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/235922, chr12-CpG: 97/Downstream/280947
Nearby gene
DPY19L2
Upstream sequence
GGAGCCAAACACAGGCCTGCTGGCGCCAGGAGCCGCAAGATTTTCCGTTCAGGTTGTGTCGTCTCAGAGCTAAGATGGGTGCATGCGAGTACTTCCCCGG
Downstream sequence
gactccacaaaaaaaaaaaaaaaaaagagagaaagaaagaaaaacataaatcagatatatcaattcctatttcctattctccaaagacctcccattgtcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate