ANKS1B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019665
Fusion event
HBV-ANKS1B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1788
Integrated sequence
CGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAG| |GCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTG
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
100328104/99934326 (Hg38)
End
100328104/99934326 (Hg38)
Location type
Intron25
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1938878; hsa-mir-1178/Downstream/255558;
Nearest TSS
ENST00000382841/Upstream/108935; ENST00000550886/Downstream/49911;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1038730, chr12-CpG: 85/Downstream/50139
Upstream sequence
TTACCAATGTGACATTTGTGCAAATACTCTAAAGTTTTATATAGCCAGATCAATTTGTCCTCTTTTGTAATAAAAAAAAAAAGTCTTTAAAAAAAGATTT
Downstream sequence
gagaactactgTAGTTTCTTAAGTTGTATGATTGAATGATTCATTCATTTTTACCTGGTGATGCTGCTGCATTTGGGTGCTTTGCCCTTTATGCATTTTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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