Basic Information
VIS ID
TVIS10019669
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1821
Integrated sequence
TGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA| |CTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATA
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20812392/20607087 (Hg38)
End
20812392/20607087 (Hg38)
Nearest miRNA
hsa-mir-10393/Downstream/225708;
Nearest TSS
ENST00000557528/Upstream/65287; ENST00000560839/Downstream/32803;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/24275, chr15-CpG: 76/Downstream/148363
Nearby gene
GOLGA8CP
Upstream sequence
GGTCCTTCCGAGGAAGCTAAGGCTGCGTTGGGGTGAGGCCCTCACTTCATCCGGCGACTAGCACCGCGTCCGGCAGCGCCAGCCCTACACTCGCCCGCGC
Downstream sequence
gccaagaaaacttttcttttgattacagcttttaacaactgagaaaaatatactcctgtgaacaaaatttggagcatgtttgtttctctctacctgattt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate