Basic Information
VIS ID
TVIS10019670
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1495
End
1828
Integrated sequence
TCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAG
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
49280152/48987955 (Hg38)
End
49280152/48987955 (Hg38)
Nearest miRNA
hsa-mir-10393/Upstream/3554826; hsa-mir-11181/Downstream/181115;
Nearest TSS
ENST00000557528/Upstream/24511; ENST00000557910/Downstream/8534;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/11874, chr15-CpG: 43/Downstream/58211
Nearby gene
SECISBP2L
Upstream sequence
GGAAAGGTTTGGTCTCTTAATAGTATACAAGTATCATGTCTGTCTCATCCATAAACTGGAAAATACTCAGTATAACTGAATAAAACTTTTTTTTACTTTT
Downstream sequence
TTTCTTTGTTATGAAAATTAGTATCCTATTTTCTGACAGATGAATGCACTTTTTCAGATTCCCTACATTTCACTGTGACATAGTGAGAAGTCCTGGGGCT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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