Basic Information
VIS ID
TVIS10019674
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
72150074/74482839 (Hg38)
End
72150074/74482839 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/1629457;
Nearest TSS
ENST00000575820/Upstream/24895; ENST00000580229/Downstream/12977;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/25357, chr18-CpG: 100/Downstream/12861
Nearby gene
CNDP2
Nearest cancer related gene
CNDP2(TSG, No orient)
Upstream sequence
ATTAATTAAGTTGGCACTGGACTTCCGGTGGTCAGTCATGTGTGTCATCTGTCACGTTTTTCGGGCTCTGGTGGAAATGGATCTGTCTGTCTTCTCTCAT
Downstream sequence
CTCAGACCTTCCCAGCGTGGGCATCCGTGTGAGAGCCCGGGATTCTCAAAGCTCCCCTTGTGCTGCTCATGGGGCAGCTGCCCGCTTCCGACCTGTGTGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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