Basic Information
VIS ID
TVIS10019676
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1749
Integrated sequence
TCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGA| |GGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTT
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
10317843/10337195 (Hg38)
End
10317843/10337195 (Hg38)
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/2965503; hsa-mir-1-1/Downstream/312441;
Nearest TSS
ENST00000382410/Upstream/40965; ENST00000334534/Downstream/31524;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/118859, chr20-CpG: 71/Downstream/96433
Nearby gene
MKKS
Upstream sequence
agcatcaaaacatctgggtttaaatctcagctccatagtttaccagctgacttaacctctccaagactctgctgtcacatctctaaaatactgatgatca
Downstream sequence
TTTATATAACCCTAGAGATACAAACATAATTTTAGTTGAGTTTTCTTTTGTAGAGAAAAATTGCAAAGGACTAAAATACACCCAAaaaaattactgtatg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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