KIF16B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019677
Fusion event
HBV-KIF16B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1677
End
1781
Integrated sequence
AGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGG
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
16436331/16455686 (Hg38)
End
16436331/16455686 (Hg38)
Location type
Intron11
Target gene
KIF16B
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-221-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/5805991; hsa-mir-1-1/Downstream/2014929;
Nearest TSS
ENST00000382410/Upstream/50819; ENST00000616572/Downstream/117747;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/2459264, chr20-CpG: 50/Downstream/117505
Upstream sequence
cccaagtagctgggattatagctatgtgccacgacaccaggctaatttttgtattttaagtagagacagggtttcaccatgttggccaggctgatctcga
Downstream sequence
TAAGGAGAGAAAGAAAGAGACAAAAGGACAGTAGGTTACATTAAGGAGTGAGAACAGGCTACAAACTGCCTGCCAGGAAATCCTACATATGTATTTATTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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