Basic Information
VIS ID
TVIS10019679
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1823
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chrX
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
86420240/87165237 (Hg38)
End
86420240/87165237 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/1261530; hsa-mir-105-1/Downstream/7897904;
Nearest TSS
ENST00000429181/Upstream/450585; ENST00000373114/Downstream/352512;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1016364, chrX-CpG: 43/Downstream/4269366
Nearby gene
KLHL4
Upstream sequence
tgtgtgtgtgtgtatgtgtgtgtgtgtgtgACagtctcactctgtagcccaggctgaaatgcagtggcacgatctcagctcactgcaacctccgcctccc
Downstream sequence
atgagcatgggtccattgcttcacttcatttgtggtcacgtgagttcattgatcagaagcaatgttgtgtggaatatcatgatggtgaataaagtattcg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate