Basic Information
VIS ID
TVIS10019681
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72745021/71879304 (Hg38)
End
72745021/71879304 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5602376; hsa-mir-1243/Downstream/4694264;
Nearest TSS
ENST00000502981/Upstream/55324; ENST00000344413/Downstream/152500;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/691552, chr4-CpG: 30/Downstream/152543
Nearby gene
GC
Upstream sequence
AGAGTAGCATTATAGATTTGTAGTTAACAGCTGAGGTTCCActgagttcaaatataccctttactacttataaattccttgatcaaactctttgtgtatt
Downstream sequence
ttctatttcgaattttacttgtgataaactgtacagtattgctgtgaggagctacatatatgtatacatatatttatatgtaaaagctttttttaaactg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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