Basic Information
VIS ID
TVIS10019682
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1596
End
1794
Integrated sequence
CTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAA
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78991138/76376222 (Hg38)
End
78991138/76376222 (Hg38)
Nearest miRNA
hsa-mir-101-2/Upstream/5566138; hsa-let-7a-1/Downstream/7593526;
Nearest TSS
ENST00000422679/Upstream/187583; ENST00000488136/Downstream/17544;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/483486, chr9-CpG: 101/Downstream/17499
Nearby gene
RFK
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Downstream sequence
GTTTGACCATTCCCCATACACTGAAGAAAAGACAACATTTACTCAATTATTCTTTATAGGGCATCATTTATTCAATCATGTTTTAACATGTAAAGCATTG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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