SLCO1B1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019683
Fusion event
HBV-SLCO1B1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1804
Integrated sequence
ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
21379955/21227021 (Hg38)
End
21379955/21227021 (Hg38)
Location type
Intron14
Target gene
SLCO1B1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-511-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/3553627; hsa-let-7i/Downstream/2985400;
Nearest TSS
ENST00000382841/Upstream/95819; ENST00000537593/Downstream/97660;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/673951, chr12-CpG: 34/Downstream/210514
Upstream sequence
ACAAATCAGTAAAATAGAAGTAGCTAAGTAGAACTGATTTTGCTATAGAGTATAAGTCACTTAGTGTTGCTGTTTATTACTAAAAATAAGTTCTTTTCAG
Downstream sequence
GTAAGTCTACTCTCCATAATTCCAGAGAATTAGCTACGTATGGAACAGACACTAGGAGAGAAGGAAGAAGAAGAAGGGGCTTTGAGTGAATAGATGTTTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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