MFSD11 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019689
Fusion event
HBV-MFSD11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1832
Integrated sequence
TGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCT| |CTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGA
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74741687/76745605 (Hg38)
End
74741687/76745605 (Hg38)
Location type
Intron8
Target gene
MFSD11
miRNAs that regulate target gene
hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-371a-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6778-3p
Nearest miRNA
hsa-mir-10226/Upstream/9057; hsa-mir-1250/Downstream/343812;
Nearest TSS
ENST00000595228/Upstream/3414; ENST00000585958/Downstream/2326;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7465, chr17-CpG: 254/Downstream/122483
Upstream sequence
AATGGGGGCCTGGACCTCGTGGAAAGAAGATGTGAAGGTCACACCTGGCAGGGACCAGCTCTGGAGGGCAAACCTCACCTTTTAAAATTCCCAACTTGCA
Downstream sequence
accacaaaccagatccatataaggtggtgaacttaattgataaatgttgtgtgtgttctgactgttccactgcaggccatcccccatctccctccctctt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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