Basic Information
VIS ID
TVIS10019691
Fusion event
HBV-chr19 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1245
End
1744
Integrated sequence
CCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCC
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52098574/51595321 (Hg38)
End
52098574/51595321 (Hg38)
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/388312; hsa-let-7e/Downstream/97291;
Nearest TSS
ENST00000633603/Upstream/13953; ENST00000601315/Downstream/3968;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/574, chr19-CpG: 20/Downstream/3227
Nearby gene
LINC01530
Upstream sequence
CTCCTTAGACCTTCATTCTCAGATCCCCACAATTCATATATACCTGGGACTCTCAGGCCCCTGGAACCATCAGACCCCAGGCCCTAGGTTGGCTGCTCAC
Downstream sequence
actgcaggggcctcctcactgttctgtttcttcccttgccacactccaccctctattcaggcacagtgccaggaagcctgtggaaatataaatcagatcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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