FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019693
Fusion event
HBV-FN1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
455
Integrated sequence
CAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTA| |TCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATG
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
216249700/215384977 (Hg38)
End
216249700/215384977 (Hg38)
Location type
Intron19
Target gene
FN1
miRNAs that regulate target gene
hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p
Nearest miRNA
hsa-mir-10b/Upstream/1626818; hsa-mir-1244-1/Downstream/2515536;
Nearest TSS
ENST00000437798/Upstream/897; ENST00000412951/Downstream/8170;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/72568, chr2-CpG: 43/Downstream/50567
Upstream sequence
catgcatcaccatgcccagctaatttttgtatttctagtagagatggggtttcaccatgttggccaggctgatctcgaactcctgacctcaagtgatcct
Downstream sequence
TAGAAAAAAAAGGGAAACTTTTCACATCCGTAATTTTCAAACAATATTCAGATTTACTGTTTGTTCATTTTCCAGATAATTGTCTTAATGATTCTTCCAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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