Basic Information
VIS ID
TVIS10019695
Fusion event
HBV-LOC100130207 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
406
End
1766
Integrated sequence
TCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCC
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3747401/3705717 (Hg38)
End
3747401/3705717 (Hg38)
Location type
Intronic
Target gene
LOC100130207
Nearest miRNA
hsa-let-7g/Downstream/1544460;
Nearest TSS
ENST00000440867/Upstream/78421; ENST00000472075/Downstream/92497;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/525784, chr3-CpG: 190/Downstream/93112
Nearby gene
LRRN1
Upstream sequence
aatccatatccatcaaaagtaaaataaattgtagtatattcataaaatagaaaactctaaagcagtgaaatttatcaatgtgaggaatgtaatactgagt
Downstream sequence
CTTCATCCAAGCTCTTGGTATCTATTCTTTAACTTGaataataaaaaataaattttttaaataataaCTTTCCATGTTTTAGAGGAACCGGCAGAGAAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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