Basic Information
VIS ID
TVIS10019696
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1354
End
1602
Integrated sequence
CCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCA
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
38697907/38304105 (Hg38)
End
38697907/38304105 (Hg38)
Nearest miRNA
hsa-mir-1244-3/Upstream/12430026; hsa-let-7i/Downstream/4019595;
Nearest TSS
ENST00000382841/Upstream/4085252; ENST00000553138/Downstream/12473;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/140214, chr12-CpG: 25/Downstream/12485
Nearby gene
ALG10B
Upstream sequence
gcactgacgcaatcacggctcactgcagccttgacctccagagatcaagagatcctcttgcctcagcctctcaaagtgctgggacgacagccgtgagcca
Downstream sequence
ctgtgcctggcttatcttGCTGATCTTTTCAACTCTAAGAGTGAATACTTTTCTTTTCTTTTTAAAATTCTTTTTCGGAACCCTCAAACACCTACTCTCT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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