Basic Information
VIS ID
TVIS10019697
Fusion event
HBV-LOC105375670 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1512
End
1756
Integrated sequence
GACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTA
Host Sequence
Chromosome
chr8
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
101459564/100447336 (Hg38)
End
101459564/100447336 (Hg38)
Location type
Intronic
Target gene
LOC105375670
Nearest miRNA
hsa-mir-12123/Upstream/64491; hsa-mir-10400/Downstream/255632;
Nearest TSS
ENST00000518652/Upstream/16339; ENST00000521851/Downstream/28339;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/136850, chr8-CpG: 62/Downstream/111951
Nearby gene
ANKRD46
Upstream sequence
ggatggtctcgatctcctgaccttgtgatccacctgcctcggccccccaaagtgctgggattacaggcgtgagccaccatgcccggccTGAAGAAGTTTT
Downstream sequence
aacttttttgtgtgttgatcttgtgccctgcaactttgctggctttgtttattagctctggtagatttcttgtggattctttgggattttctatatatag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate