VISDB Viral Integration Site DataBase

VIS ID

TVIS10019698

Fusion event

HBV-SCN3B integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1550

End

1815

Integrated sequence

CCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCG

Chromosome

chr11

Cytoband

q24.1

Reference genome

Start

End

123522049/123651341 (Hg38)

Location type

Intron5

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-1228-3p ; hsa-mir-1273e

Nearest miRNA

hsa-let-7a-2/Upstream/269829; hsa-mir-3167/Downstream/3337117;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/73667, chr11-CpG: 96/Downstream/2684

Upstream sequence

CCAACAGTGAGTTTTCTTGCTCAAGAGACAACTCTTAGTCTCCTACGCTTCTTTTCCAGTACATGAAACATTACCATATGCAGAAAACCATTCGTCTTAC

Downstream sequence

TTTAATATAGGAAAAGTATAGGGTGCTAAAGATCAATTTGTGGCTTTCTTTTCCAATGAACTGCTAAAGTTCCACTTTTATGCCCAAGATTCTTATCATA