Basic Information
VIS ID
TVIS10019700
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
47391789/46926117 (Hg38)
End
47391789/46926117 (Hg38)
Nearest miRNA
hsa-mir-12136/Upstream/2380565; hsa-mir-101-1/Downstream/4133720;
Nearest TSS
ENST00000473358/Upstream/109069; ENST00000466294/Downstream/8129;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/206706, chr1-CpG: 40/Downstream/97437
Nearby gene
CYP4A11
Upstream sequence
atataaaaacattaaatagatagatagatagatagatagatagatagatagatagatagacagatagatctttaaagtatgtaagtaaaatttgacaaaa
Downstream sequence
CTTCATCCAGGGCTTTTCTTCACTCCCCACCTCGATTCCCTGTTCCTCAAAAGTAAACTTCTGGGTTTATTTTTTTGTTCTTTTGCCCCAATGGCCCAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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