Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019701
Fusion event
HBV-DAB1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1354
End
1597
Integrated sequence
CCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCT
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
Start
End
57906700/57441028 (Hg38)
Location type
Intron14
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/2215305; hsa-mir-101-1/Downstream/2292199;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/16063, chr1-CpG: 87/Downstream/808572
Upstream sequence
AAAGTTAAACTGATGTTTGATTCAAATACtaattatttttattttttaatttttaaaaaatttttttCACAAAATTattcactcattttatacacatttt
Downstream sequence
taggtatatctcctaatgctatccctcccccgaccccacaacaggccccggtgtgtgatgttccccaccctgtgtccaggtgttctcattgttcgattcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13