Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019702
Fusion event
HBV-FGGY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1547
End
1830
Integrated sequence
TCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCT
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
Start
End
59996473/59530801 (Hg38)
Location type
Intron7
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12136/Upstream/4305078; hsa-mir-101-1/Downstream/202426;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/233679, chr1-CpG: 90/Downstream/283614
Upstream sequence
agcaattctcaagcctcaacctccccagtggctgggattacaggcgcccaccatcacgcctggcttacttttagtagagatggggtttcaccatgctggc
Downstream sequence
agtgtccagatatcctgatatctagagaacaatggcattcctaattttgctttaaagataataatatcgattcttgcaaactatagtaattaagaaaatt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13