Basic Information
VIS ID
TVIS10019707
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1520
End
1838
Integrated sequence
ACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTAC
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
77764036/77714885 (Hg38)
End
77764036/77714885 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/1976522; hsa-mir-12124/Downstream/1793002;
Nearest TSS
ENST00000440867/Upstream/79960; ENST00000461186/Downstream/331909;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/616637, chr3-CpG: 49/Downstream/1304028
Nearby gene
ROBO2
Upstream sequence
gaaggagagggagggagaaggatgagggggaaagaaatgaagggggttgggggagggggagagagagagagagagTAATAGGAGATCCCTAAAGAAAAGA
Downstream sequence
CATTTCAATATAATGCATTAAGCAAGAATGAATAATTTAAAATATTGGGCTAAAACAAATGTTTCAGGGAAGCAAAATAACATACTTTATATATAAAGTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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