Basic Information
VIS ID
TVIS10019708
Fusion event
HBV-LOC107986157 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1398
End
1772
Integrated sequence
ACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTT
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
179244229/179526441 (Hg38)
End
179244695/179526907 (Hg38)
Location type
Intronic
Target gene
LOC107986157
Nearest miRNA
hsa-let-7g/Upstream/3011290; hsa-mir-1224/Downstream/4359893;
Nearest TSS
ENST00000440867/Upstream/74851; ENST00000490364/Downstream/35973;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/74960, chr3-CpG: 95/Downstream/35667
Nearby gene
ACTL6A
Upstream sequence
tctatccacctgagaaagggctaatatccagaatctacaaggaactttaataatttacaagaaaaaaacaaccccatcaaaaagtaggagaaggatatga
Downstream sequence
AATTAATTTTATATATGAACGGTACAAATGGACATTGTAGAATGCATTAGGAGGCTTAAGAGAGCAGAGAGAACATTCTGTGAACTGCTCCCCAACCCCA
Target sequence
ACTGAAGATAAAACATACTGCACTTCAATTTGCAGAGATATGATCAAATATCCCTCAGAAGATTCTGATGTCTAAATGaaaataggagtttctgggccaataaagctgagggccacactttggaccctggAAGGCCACCCTGAGTGGTCTGCTTACCTCTCTCCTGTATGTCTCTATTTTATTCTCTCTCTAACTCAACACTGTCTTTGTTATCTTTATTGCATAATATCTGAACCGTGCTTCCATGCCAAGGCT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate