Basic Information
VIS ID
TVIS10019709
Fusion event
HBV-LINCR-0002 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1796
Integrated sequence
CTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAAT| |TGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTT
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
191205030/191487241 (Hg38)
End
191205030/191487241 (Hg38)
Location type
Intron1
Target gene
LINCR-0002
Nearest miRNA
hsa-let-7g/Upstream/1657232; hsa-mir-3137/Downstream/3647265;
Nearest TSS
ENST00000440867/Upstream/26078; ENST00000438488/Downstream/70083;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/157320, chr3-CpG: 24/Downstream/375898
Upstream sequence
ggcaaagacttcatgactaaaacaccaaaagcaatggcaacaaaagccaaaatagacaaatcggatctaattaaactaaagagcttctgcacagcaaaag
Downstream sequence
cagcaaacaatctgaaatagaaattgagaaaataactccatttataatacctatcgaaaaaataaaatacctaggaattaacataaccgaaggagtgaaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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