Basic Information
VIS ID
TVIS10019711
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1469
End
1702
Integrated sequence
GGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGG
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39044912/39043292 (Hg38)
End
39044912/39043292 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/175165; hsa-mir-1243/Downstream/368618;
Nearest TSS
ENST00000502981/Upstream/10370; ENST00000514399/Downstream/1747;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/175133, chr4-CpG: 93/Downstream/1274
Nearby gene
KLHL5
Upstream sequence
aggaagatattctgtatctgggctatccaataaggtagtcactggtcacatggctattgagtacttcaaatatgacaagtgcaactgagaaacaaaaact
Downstream sequence
AATCCAAGACTGAACAAGTAACTATGAGCAGGGAAGAAAAAAAAAACAACTATGAGAAGAATGTCATTGCGGTTAATGTACACAAAGGTAAACACTGAAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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