Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019712
Fusion event
HBV-UGT2B7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1434
End
1820
Integrated sequence
CGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAAC
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
Start
End
69931137/69065419 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12113/Upstream/2788491; hsa-mir-1243/Downstream/7508149;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/715216, chr4-CpG: 55/Downstream/1622718
Nearby gene
Upstream sequence
AATGATCTACAAGGCAATCACAGACTTTAATTGTGTTTCTGCAACTATATTATTGGGCTGGATGTTACATATAAGATTAGGCTTGATATCATTTTAAAAC
Downstream sequence
AACAGCCAACAGAACAAAATTTAGCATCATCACAATTTTGGAAGTTTTTCAACAGCCCTATGATTTATAAACTGTCAATCACTATTTTTACATATAAATC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13