Basic Information
VIS ID
TVIS10019715
Fusion event
HBV-LOC101927947 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1448
End
1757
Integrated sequence
CCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGG
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
154858320/153937168 (Hg38)
End
154858320/153937168 (Hg38)
Location type
Intronic
Target gene
LOC101927947
Nearest miRNA
hsa-mir-12113/Upstream/1400652; hsa-mir-1305/Downstream/5191634;
Nearest TSS
ENST00000502981/Upstream/148048; ENST00000625026/Downstream/204954;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/144080, chr4-CpG: 39/Downstream/395810
Nearby gene
SFRP2
Upstream sequence
ccatagggtggttttcctcctatctcagaattgaacaggtgtacaatcgggttttataccgagacatcaagttcccaggggcaggcaggaaatggtggcc
Downstream sequence
TAGATGATGAAATACAAAATCAGACTTCATGCAAAGAAATTTCATCAAATTAAAAAATATATATAAGCACAAATACTTATCCAGTGGAAAAAACTGCCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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