Basic Information
VIS ID
TVIS10019717
Fusion event
HBV-LOC105374655 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1513
End
1737
Integrated sequence
ACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAG
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12418517/12418405 (Hg38)
End
12418517/12418405 (Hg38)
Location type
Intronic
Target gene
LOC105374655
Nearest miRNA
hsa-mir-10397/Upstream/1940260; hsa-mir-103a-1/Downstream/2407524;
Nearest TSS
ENST00000502646/Upstream/514362; ENST00000505877/Downstream/156232;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/513814, chr5-CpG: 46/Downstream/376455
Nearby gene
LINC01194
Upstream sequence
cagtatcaaaatctatattaggcagggttccccagggaaacagaaccaatagaatgtgtgtctgtatgcatatatgcatatatatgcatatacatgtgta
Downstream sequence
aggactactggatcttcttcaccccaaactccttaattgttaatataacccaatataacccctttggtgatcccctacaaccatttcccaggctttaacc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate