Basic Information
VIS ID
TVIS10019718
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1581
End
1822
Integrated sequence
TGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
29607528/29607421 (Hg38)
End
29607528/29607421 (Hg38)
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/12451429; hsa-mir-103a-1/Downstream/2328681;
Nearest TSS
ENST00000502646/Upstream/211440; ENST00000506396/Downstream/1586329;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/678891, chr5-CpG: 37/Downstream/1586424
Nearby gene
LINC02064
Upstream sequence
agaaggtgaaaggaagcaaggcatatcttacatgatggcgggagagggagagagaaattgaagtggagaagtgtcacactctaaaagcatcagctcttgt
Downstream sequence
ACATTTTTTTCATTTGCAAACTGTAAGTGGGAGAATTGGGAGATGGAACAAGCATGTGGGTTTTTGTTCCAAAATAATAACTTAAACAGTAACAAAGCCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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