Basic Information
VIS ID
TVIS10019719
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1796
Integrated sequence
CTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAAT| |TGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTT
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
86400769/87104952 (Hg38)
End
86400769/87104952 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/4264728; hsa-mir-103a-1/Downstream/9927;
Nearest TSS
ENST00000502646/Upstream/137631; ENST00000515750/Downstream/15196;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2720167, chr5-CpG: 34/Downstream/162588
Nearby gene
MIR4280
Upstream sequence
agagcaatgatcacagatataattTGAATGCAGTAGACATAAACTTCTATAAGAAATCTACTTAATTTTTCTGTCTCAGGATTGTTGTCTTTAAAACGGG
Downstream sequence
TTCACTAAGTTTAGTGTTAAAATAACAAATTAGTATGAGAACACCATGTGTGCCATTGCTACTAATGTATTTGAAAGCTTCAGAAATTTATCCAGACATa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate