Basic Information
VIS ID
TVIS10019720
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1819
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
107853822/108518121 (Hg38)
End
107853822/108518121 (Hg38)
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/7701556; hsa-mir-103a-1/Downstream/1995708;
Nearest TSS
ENST00000502646/Upstream/136023; ENST00000513676/Downstream/210139;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/135521, chr5-CpG: 34/Downstream/209913
Nearby gene
LINC01023
Upstream sequence
TTAGACTATTCACTGGCTGCCCAAGGGATGAGTAAATCAGAACAGTTAGAAGAAATGCAGAACGTAAAAACAAACCCAGAGTGAGTATTTATGTAAATAA
Downstream sequence
ggcatttgtaaactgtcattggcactgctgggagtgtagctgtgaggacgatcagaagtcactctttttggttttggtggggtttagctggcttctttac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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