Basic Information
VIS ID
TVIS10019721
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1628
End
1814
Integrated sequence
CCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC
Host Sequence
Chromosome
chr6
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
9555169/9554936 (Hg38)
End
9555169/9554936 (Hg38)
Nearest miRNA
hsa-mir-3691/Upstream/3385501; hsa-mir-10398/Downstream/884781;
Nearest TSS
ENST00000381078/Upstream/393159; ENST00000645232/Downstream/849566;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/155570, chr6-CpG: 35/Downstream/764512
Nearby gene
TFAP2A
Nearest cancer related gene
TFAP2A(TSG, No orient)
Upstream sequence
atcagtgcagtaagaatccatttttcttttgcaacaggatgcaagtggagaaaccagttgttttaccaagggtttgattataagggtatgcttctctttg
Downstream sequence
AAGCCATTTGCACAGAGTAAGGATTTGATGTTCTCTAACTAGGTAATAGGATTACTATATTTTGAAATGGTCCCTTTGGGACAATCCTTATGCAATTTCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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