Basic Information
VIS ID
TVIS10019722
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1822
Integrated sequence
GTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAAC| |TTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAA
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26013534/26013306 (Hg38)
End
26013534/26013306 (Hg38)
Fragile sites / regions
FRA6C
Nearest miRNA
hsa-mir-3691/Upstream/7441426; hsa-mir-10398/Downstream/1134320;
Nearest TSS
ENST00000381078/Upstream/65; ENST00000613854/Downstream/4426;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/20370, chr6-CpG: 41/Downstream/7137
Nearby gene
HIST1H1A
Upstream sequence
tcaaaaaaaaataaaaaaataaaaaagttgcccagtgacagagccaagtcttgctttacaagcctaggctcgctctcctacactaactaccTGGCCCCAT
Downstream sequence
tggaaatcaaaataggggttatgtttagggcagatggagtgataatgtgactggaagcaagcatcaggcggctctgggagggttggctgattttctgttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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