Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019724
Fusion event
HBV-AOAH integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1810
Integrated sequence
CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
Start
End
36647098/36607492 (Hg38)
Location type
Intron10
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1183/Upstream/1666658; hsa-mir-10399/Downstream/311865;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/217295, chr7-CpG: 136/Downstream/840259
Upstream sequence
TTAAACAGTTCTGTCTTATTGCTAGATAACATTCAGTCCTAACTTGGTTTATGTTGTTTTGTAAAGTTAGAGGTCTTTTGAGTTTGGAGGTTATTGGATC
Downstream sequence
gagacaactccttcctttttcccactgcacactcatctgtggtgctaattcatcccttgccctggaagaaaatccagaccagcccaattatgcacatgct
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13