Basic Information
VIS ID
TVIS10019725
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
53106045/53038352 (Hg38)
End
53106045/53038352 (Hg38)
Nearest miRNA
hsa-mir-1183/Upstream/8156552; hsa-mir-10399/Downstream/3917433;
Nearest TSS
ENST00000635602/Upstream/2710; ENST00000629899/Downstream/478764;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/2086, chr7-CpG: 21/Downstream/148937
Nearby gene
POM121L12
Upstream sequence
GGGAACTAGATTTGAAGTCTAATCCTGAGCATGCTAGCTGTATGACATTACACTAATTGTGATTGCCATGCTGTGTGGTATTAAACTAAATTTGATTGTC
Downstream sequence
tggaggggacacacatccaaactatatcaTCAGGCTTGGAGTCAGGGACTGTAGAAGCCACTAGGAGATATTAGGTTGTGAAGTAAAGCGGGCAATAAGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate