Basic Information
VIS ID
TVIS10019726
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
88178324/88549009 (Hg38)
End
88178324/88549009 (Hg38)
Nearest miRNA
hsa-mir-10525/Upstream/12633740; hsa-mir-10399/Downstream/3655006;
Nearest TSS
ENST00000635602/Upstream/242118; ENST00000444032/Downstream/161622;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/328730, chr7-CpG: 65/Downstream/210165
Nearby gene
ZNF804B
Upstream sequence
GTTTTATCCTCTTTTGATAACACTAATCTCGAGTGTAGTTAAATATTATACCAACCAGTATCAATTTTGTGCACAGAGGTTTCTATTTTATCTCATACCA
Downstream sequence
TCATATTTGAAAGCATAAGTGAAAATTTATACTGAACATAGAATTACCATTTACATAATCATGTAAGTGTGATAGATGGAGAACAATTACCTGTGAATGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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