VISDB Viral Integration Site DataBase

VIS ID

TVIS10019727

Fusion event

HBV-ST18 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1525

End

1795

Integrated sequence

GCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGA

Chromosome

chr8

Cytoband

q11.23

Reference genome

Start

End

53119749/52207189 (Hg38)

Location type

Intron18

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-580-3p ; hsa-mir-451b ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-3691-5p ; hsa-mir-376b-5p ; hsa-mir-376c-5p ; hsa-mir-3911 ; hsa-mir-4711-3p ; hsa-mir-4752 ; hsa-mir-496 ; hsa-mir-574-5p ; hsa-mir-627-5p ; hsa-mir-6744-5p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-8056 ; hsa-mir-924

Nearest miRNA

hsa-mir-124-1/Upstream/9310914; hsa-mir-10400/Downstream/9507599;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/307437, chr8-CpG: 117/Downstream/357795

Upstream sequence

TCATTTATTAAAATTTTGCTTAATAAGATACAATTTGGGGATTTAAGAATCAAATACAAATTCAGCCTTTTTCATTTCTATAGATGTCTATTTATGATAG

Downstream sequence

TAAATCTATAACTAggccaggcatggtggctcacacctataatcccagcactttgggaggccaaggcaagaagattgcttgagctcaagagtttgatgga