Basic Information
VIS ID
TVIS10019728
Fusion event
HBV-LOC105375631 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
90511313/89499084 (Hg38)
End
90511313/89499084 (Hg38)
Location type
Intronic
Target gene
LOC105375631
Nearest miRNA
hsa-mir-12123/Upstream/9257611; hsa-mir-10400/Downstream/1706401;
Nearest TSS
ENST00000518652/Upstream/690176; ENST00000517696/Downstream/118073;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1170832, chr8-CpG: 92/Downstream/258223
Nearby gene
LOC101929709
Upstream sequence
TTCTTCAAGCCACAGGTATGATTCTTACCATTCTTAGTGCTATGATGAATGTGTAATAGGATGGATTGTGTTTGACTATATAAAAAGCAACTTTATAGTT
Downstream sequence
acataggggcataatttcttcagtgacagcttgatcaagaggtcctaaggatattgccaggagttggtctttctttgcccctagttttgcactactctac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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