Basic Information
VIS ID
TVIS10019730
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1781
Integrated sequence
ATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAG| |GCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTG
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
121292209/118529931 (Hg38)
End
121292209/118529931 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/4320402; hsa-mir-12126/Downstream/1715048;
Nearest TSS
ENST00000422679/Upstream/632675; ENST00000456032/Downstream/176029;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/784567, chr9-CpG: 97/Downstream/838877
Nearby gene
BRINP1
Nearest cancer related gene
BRINP1(TSG, No orient)
Upstream sequence
gtagtctcaaactcctggcctcaagtgatatccacccccctcagcctcccaaagtgctgggattataaacgtgagccactgcacccagccCAAGCTACAT
Downstream sequence
ATATACTTTTATTATAGATTTTTACAGCAGAAATGAATATAACAGTTATGTGGCTCTCCAGATCATAAGATACTGAATTGTGCAATGTTGTCTTGTGCAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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