Basic Information
VIS ID
TVIS10019731
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1825
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
10395535/10353572 (Hg38)
End
10395535/10353572 (Hg38)
Nearest miRNA
hsa-mir-3155a/Upstream/4201295; hsa-mir-107/Downstream/1777188;
Nearest TSS
ENST00000439456/Upstream/294850; ENST00000420825/Downstream/12915;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/86946, chr10-CpG: 158/Downstream/663907
Nearby gene
CELF2-DT
Upstream sequence
TACAAAAGCAAACCTGGTATCCCCAATTGCTTTTCTCTTGAGGTTGGCTTAACTTTATTTATCTTCTGTCCTGGGTCACTGCCCCTGAGGTGCTTCAAAA
Downstream sequence
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate