Basic Information
VIS ID
TVIS10019732
Fusion event
HBV-LINC02664 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1847
Integrated sequence
GAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTC| |TTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTA
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
31483498/31194569 (Hg38)
End
31483498/31194569 (Hg38)
Location type
Intron1
Target gene
LINC02664
Nearest miRNA
hsa-mir-1265/Upstream/825904; hsa-mir-107/Downstream/3885029;
Nearest TSS
ENST00000439456/Upstream/6686; ENST00000558832/Downstream/123926;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/60182, chr10-CpG: 243/Downstream/123729
Upstream sequence
AATAAGGTAGTATATTTCTGTTAGAGTTTAGAGTTTCATGAGTCAGGGACCAAGTTATTGCTTTTCTTTGCCCTGTATAAAGGCTTCTCCAAGGCCTTTG
Downstream sequence
CTGTGCCAGCAGCTCCTCCTCTGCCAGCCTGGCCCGCGGGACCACCTGTACCCCCAGCTCCAGACCCAGAGCCCAGATGGTGCTGCTGATCAGAGCCATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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