Basic Information
VIS ID
TVIS10019733
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1489
End
1822
Integrated sequence
TCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTG
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
46941312/46608303 (Hg38)
End
46941312/46608303 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
LOC105378289 ; LOC107984026
Nearest miRNA
hsa-mir-1265/Upstream/1444215; hsa-mir-107/Downstream/2377209;
Nearest TSS
ENST00000439456/Upstream/3094; ENST00000600081/Downstream/2818;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/28678, chr10-CpG: 38/Downstream/27297
Nearby gene
LOC102724593
Upstream sequence
TAAAAGGTTCATTTAATCCCATGTTCTCCTGAACTTTGCTTTTTTGCTTTCAAATAAGAAATGATGAATATAGATTTTGAGTTCATTTTTTGAAAGAGTT
Downstream sequence
agtgtcctcagttgtgaactggttataacagggttgataggaagaccaaaggagaAGGGTCACAGAGGCCCCAGATCGTGCCTAATGCTGGCTGTGACAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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