NOC3L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019735
Fusion event
HBV-NOC3L integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1586
Integrated sequence
TCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCAC| |TTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTC
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
96101261/94341504 (Hg38)
End
96101261/94341504 (Hg38)
Location type
Intron7
Fragile sites / regions
FRA10D
Target gene
NOC3L
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-3926 ; hsa-mir-4753-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-6768-3p
Nearest miRNA
hsa-mir-107/Upstream/4748677; hsa-mir-1287/Downstream/1722811;
Nearest TSS
ENST00000439456/Upstream/16615; ENST00000485048/Downstream/21435;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/347060, chr10-CpG: 39/Downstream/21279
Upstream sequence
ACCAGGTTTGTGGAACAAGCACTTAATACTTGGCAGCGAGCAGCTAACGACTTGATACACAAGCGAGAGAATGTAGGAGGCCCCTCGTAGCTGAGGGTCG
Downstream sequence
tatatatttctggatgtgaggtacctagagtagtcaaattcataaaaacttaaagtagaatgacagttttcagggcatagggagacaggaaaacagagag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate