Basic Information
VIS ID
TVIS10019736
Fusion event
HBV-MIR4300HG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1415
End
1822
Integrated sequence
ACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTG
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81976770/82265728 (Hg38)
End
81976770/82265728 (Hg38)
Location type
Intron5
Target gene
MIR4300HG
Nearest miRNA
hsa-mir-10392/Upstream/374892; hsa-let-7a-2/Downstream/4012605;
Nearest TSS
ENST00000527297/Upstream/165685; ENST00000526305/Downstream/138185;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2824568, chr11-CpG: 25/Downstream/423815
Upstream sequence
agaatgaaagaaagaaagaaagaaggaaagaaacaaaAGGTAAGACTATGGAGTCTCACTTTAATCAGAAAAGCTTACAAGGTTAGATTCATGTTTCAGA
Downstream sequence
CAATGCAACAGAGATATGAATGGGATTGTGAGAACATGAAGGGATGAAGGGGAATggtgagaaaaggctccaagagaagaagatgtctgaacaaatagcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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