OR8B3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019737
Fusion event
HBV-OR8B3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1814
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
124270843/124400947 (Hg38)
End
124270843/124400947 (Hg38)
Location type
Intronic
Target gene
OR8B3
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7a-2/Upstream/1019435; hsa-mir-3167/Downstream/2587511;
Nearest TSS
ENST00000527297/Upstream/1923; ENST00000642111/Downstream/23946;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/659110, chr11-CpG: 44/Downstream/221821
Nearby gene
OR8B3
Upstream sequence
GTGCAGCTCCCCCATTCTATAAGGAGGCTCAAAGGAGCTGCCATAGCTTGACAAGTGGACTAAATGACCACTAAAGGAAAAGTCTTCATGCTGATGATTT
Downstream sequence
atgcctggctaatttttgttgtccaagctggtctgaaactcttggcctcaagtgatcgcccacctcagcctcccaaagtgctgggattacgggtgtgagc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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