VISDB Viral Integration Site DataBase

VIS ID

TVIS10019738

Fusion event

HBV-SLCO1B1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1494

End

1814

Integrated sequence

TTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGA

Chromosome

chr12

Cytoband

p12.1

Reference genome

Start

End

21332541/21179607 (Hg38)

Location type

Intron7

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-511-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/3506213; hsa-let-7i/Downstream/3032814;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/626537, chr12-CpG: 34/Downstream/257928

Upstream sequence

TCTCCACCACTTGTAGAAATGATTCCTAGCTTTCTTCCCATAACCCTTCTAGACATTTTTTGCTTTCCAGCATCTCTTATCTCCTCACTGTCAGTTTAAG

Downstream sequence

AAAGATGTTTTATCCATGCCTAACGAGCAAGTGAGCATGAGTCCCAGTGGAAGTGAACATAAAGATTCCACAGCCCTCAAGAAAAACACTAAggctgggc