KCNC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019740
Fusion event
HBV-KCNC2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1804
Integrated sequence
ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
75533880/75140100 (Hg38)
End
75534090/75140310 (Hg38)
Location type
Intron3
Target gene
KCNC2
Nearest miRNA
hsa-let-7i/Upstream/5555277; hsa-mir-1178/Downstream/4278947;
Nearest TSS
ENST00000382841/Upstream/89173; ENST00000548779/Downstream/67694;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/602001, chr12-CpG: 68/Downstream/66991
Upstream sequence
gttttctttttttgatgtatctttgtctggttttggtatcaaggtaatactgaccttgcagaatgaacctggaaggagaaactacttccatttttcagaa
Downstream sequence
atcattagacaaggagattacacaaaaatgtggatagataggtgtgatttgtcagggaccattattattacaatctatcaaatgtgtatgataattattt
Target sequence
tcatgagagggatctactgggcttggttgggcacagtgttctcacttacatgtctggacttttttttctgggcacttctgttcttcacatagcttctccagcctacgtcaagagagtaagtcacatcatgtaagaatctatcaagcctctccttgcatcaaatttgctaatatccaactggccaaagtaagtcggatggccaaaaaaaaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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