Basic Information
VIS ID
TVIS10019741
Fusion event
HBV-LNCOG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1969
Integrated sequence
GCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACT| |TCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAG
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
76691326/76297546 (Hg38)
End
76691326/76297546 (Hg38)
Location type
Intronic
Target gene
LNCOG
Nearest miRNA
hsa-let-7i/Upstream/6712723; hsa-mir-1178/Downstream/3121711;
Nearest TSS
ENST00000382841/Upstream/37641; ENST00000551082/Downstream/50896;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/212195, chr12-CpG: 31/Downstream/50583
Nearby gene
BBS10
Upstream sequence
GTTTTTTTTTTTTTTAATCTTGGAGTTCTGCCGAAGTAGTAAAGCTCGTTAAAATACATAAGATGCCCACCCTTTTCTGTTGTTTTTAATCGTCATGGTT
Downstream sequence
tagtttgagtagagctggtattaatttttctttaaatgtttggtaaaatttagcagtgaagtcattggatcctcggcttctctttgctgggagacttttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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