FGF14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019742
Fusion event
HBV-FGF14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
102579293/101926943 (Hg38)
End
102579293/101926943 (Hg38)
Location type
Intron4
Target gene
FGF14
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-8068
Nearest miRNA
hsa-mir-1297/Upstream/2283794; hsa-mir-1267/Downstream/40699;
Nearest TSS
ENST00000623511/Upstream/10298; ENST00000444686/Downstream/440596;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/9818, chr13-CpG: 60/Downstream/467387
Upstream sequence
ctgggtgcggtggctcacacctgtaatcccagcactttgggaggcccaggcaggcagattgcttgagctcaggagagaaagaccagaagaccagcctagg
Downstream sequence
taacatggtaaaagctcctctctacaaaaaaatacaaaaattagccagatgtggtggcacacacctgtggtctgtgcttctggggatgctgaggtgggag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate